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Publications since 2003

 
Sundstrom, T., Anderson, A. and Wright, D. (2009) "Inhibitors of phosphoinositide-3-kinase: a structure-based approach to understanding potency and selectivity" Org. Biomol. Chem. 7: 840-850
 
Frey, K., Liu, J., Lombardo, N., Bolstad, D., Wright, D. and Anderson, A. (2009) "Crystal Structures of Wild-type and Mutant Methicillin-resistant Staphylococcus aureus Dihydrofolate Reductase Reveal an Alternative Conformation of NADPH that may be Linked to Trimethoprim Resistance" J. Mol. Biol. in press
 
Chen, C-Y., Georgiev, I., Anderson, A. and Donald, B. (2009) "Computational Structure-Based Redesign of Enzyme Activity" Proc. Natl. Acad. Sci. in press.
 
Bolstad, E. and Anderson, A. (2009) "In pursuit of virtual lead optimization: Pruning ensembles of receptor structures for increased efficiency and accuracy during docking" Proteins, 75: 62-74
 
Liu, J., Bolstad, D., Smith, A., Priestley, N., Wright, D. and Anderson, A. (2009) "Probing the active site of Candida glabrata dihydrofolate reductase with high resolution crystal structures and the synthesis of new inhibitors" Chem. Biol. Drug Des. 73:62-74.
 
Beierlein, J., Frey, K., Bolstad, D., Pelphrey, P., Joska, T., Smith, A., Priestley, N., Wright, D. and Anderson, A. (2008) "Synthetic and Crystallographic Studies of a New Inhibitor Series Targeting Bacillus anthracis Dihydrofolate Reductase" J. Med. Chem., 51: 7532-7540 .
 
Bolstad, D., Bolstad, E., Frey, K., Wright, D. and Anderson, A. (2008) "A structure-based approach to the development of potent and selective inhibitors of dihydrofolate reductase from Cryptosporidium"J. Med. Chem., 51: 6839-6852.
 
Liu, J., Bolstad, D., Smith, A., Priestley, N., Wright, D. and Anderson, A. (2008) "The crystal structure of Candida glabrata dihydrofolate reductase drives new inhibitor design toward efficacious antifungal agents" Chem. Biol. 15: 990-996.
 
Schormann, N., Senkovich, O., Walker, K., Wright, D., Anderson, A., Rosowsky, A., Ananthan, S., Shinkre, B., Velu, S., Chattopadhyay, D. (2008) "Structure-based approach to pharmacophore identification, in silico screening and 3D-QSAR studies for inhibitors of Trypanosoma cruzi DHFR function" Proteins, 73: 889-901.
 
Bolstad, E. and Anderson, A. (2008) "In pursuit of virtual lead optimization: the role of the receptor structures and ensembles in accurate docking" Proteins 73: 566-580.
 
Bolstad, D., Bolstad, E., Wright, D. and Anderson, A. (2008) "Dihydrofolate reductase inhibitors: developments in antiparasitic chemotherapy" Expert Opin. Ther. Pat. 18: 143-157.
 
Anderson, A. (2007). Avoiding the Rigid Receptor: Side-Chain Rotamers. In Computational and Structural Approaches to Drug Discovery. (R. Stroud, Ed.), Cambridge, UK: Royal Society of Chemistry Press.
 
Pelphrey, P., Popov, V., Joska, T., Beierlein, J., Bolstad, E., Fillingham, Y., Wright, D. and Anderson, A. (2007) "Highly efficient ligands for DHFR from Cryptosporidium hominis and Toxoplasma gondii inspired by structural analysis" J. Med. Chem. 50: 940-950.
 
Stevens, B., Lilien, R., Georgiev, I., Donald, B., and Anderson, A. (2006) "Redesigning the PheA Domain of Gramicidin Synthetase Leads to a New Understanding of the Enzyme's Mechanism and Selectivity" Biochemistry 45:15495-15504.
 
Joska, T. and Anderson, A. (2006) "Structure-Activity Relationships of Bacillus cereus and Bacillus anthracis Dihydrofolate Reductase:  Toward the Identification of New Potent Drug Leads" Antimicrob Agents Chemother. 50:3435-3443.
 
Popov, V., Yee, W. A. and Anderson, A. (2006) "Towards in silico lead optimization: scores from ensembles of protein:ligand conformations reliably correlate with biological activity" Proteins. 66: 375-387.
 
Popov, V., Chan, D., Fillingham, Y., Yee, W. A., Wright, D. and Anderson, A. (2006) "Analysis of Complexes of Inhibitors with Cryptosporidium hominis DHFR Leads to a New Trimethoprim Derivative" Bioorg. Med. Chem. Lett. 16: 4366-4370.
 
Couch, R., Ganem, N., Zhou, M., Popov, V., Honda, T., Veenstra, T., Sporn, M. and Anderson, A. (2006) "Disruption of microtubule polymerization by CDDO through tubulin binding: a possible mechanism of its apoptotic activity" Mol. Pharm. 69:1158-1165.
 
Chan, D. C. and Anderson, A. (2006) "Towards Species-Specific Antifolates" Curr. Med. Chem. 13: 377-398.
 
Stevens, B., Joska, T. and Anderson, A. (2006) "Progress Toward Re-Engineering Non-Ribosomal Peptide Synthetase Proteins: A Potential New Source of Pharmacological Agents" Drug Dev. Res. 66: 9-18.
 
Couch, R., Browning, G., Honda, T., Gribble, G., Wright, D., Sporn, M. and Anderson, A. (2005) "Studies on the Reactivity of CDDO, A Promising New Chemopreventative and Chemotherapeutic Agent: Implications for a Molecular Mechanism of Action" Bioorg. Med. Chem. Lett. 15: 2215-2219.
 
Finer-Moore, J., Anderson, A., O’Neil, R., Costi, P., Ferrari, S., Krucinski, J., and Stroud, R. (2005) "Importance of target dynamics for drug design: Structure of Cryptococcus neoformans thymidylate synthase suggests strategies for species-specific inhibition" Acta Cryst. D61: 1320-1334.
 
Anderson, A. (2005) "Two Crystal Structures of Dihydrofolate Reductase-Thymidylate Synthase from Cryptosporidium hominis Reveal Protein:Ligand Interactions Including a Structural Basis for Observed Antifolate Resistance" Acta Cryst. F 61:258-262.
 
Anderson, A. and Wright, D. (2005) "The Design and Docking of Virtual Compound Libraries to Structures of Drug Targets" Curr. Comp.-Aided Drug Design 1: 103-127.
 
Anderson, A. (2005) "Targeting the DHFR of Parasitic Protozoa" Drug Disc.Today 10:121-128.
 
Lilien, R., Stevens, B., Anderson, A. and Donald, B. (2005) "A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign, and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme" J. Comput. Biol. 12:740-761.
 
Honda, T., Janosik, T., Honda, Y., Han, J., Liby, K., Couch, R., Anderson, A., Sporn, M. and Gribble, G. (2004) "Design, Synthesis and Evaluation of Biotin-Conjugates of 2-Cyano-3,12-dioxooleana-1,9(11)-dien-28-oic Acid (CDDO) for the Isolation of Protein Targets" J. Med. Chem. 47:4923-4932.
 
Belperron, A., Fox, B., O’Neil, R., Peaslee, K., Horii, T., Anderson, A., and Bzik, D. (2004) "Toxoplasma gondii: Generation of Novel Truncation Mutants In the Linker Domain of Dihydrofolate Reductase-Thymidylate Synthase" Exp. Parasit. 106:179-182.
 
Lilien, R., Bailey-Kellogg, C., Anderson, A. and Donald, B. (2004) "A Subgroup Algorithm to Identify Cross-Rotation Peaks Consistent With Non-Crystallographic Symmetry" Acta Cryst. D 60: 1057-1067.
 
Lilien, R., Stevens, B., Anderson, A. and Donald, B. (2004) "A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign, and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme" In Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology (RECOMB), pp. 46-57, ACM Press. San Diego, March 2004
 
O'Neil, R., Lilien, R., Donald, B., Stroud, R. and Anderson, A. (2003) "The Crystal Structure of Dihydrofolate Reductase-Thymidylate Synthase from Cryptosporidium hominis Reveals a Novel Architecture for the Bifunctional Enzyme", J. Eukaryot. Microbiol. 50: 555S-556S.
 
O'Neil, R., Lilien, R., Donald, B., Stroud, R. and Anderson, A. (2003) "Phylogenetic classification of protozoa based on the structure of the linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate synthase" J. Biol. Chem., 278: 52980-52987.
 
Anderson, A. (2003) "The Process of Structure-Based Drug Design" Chem. Biol., 10:787-797.