MCB2225: Cell Biology Lab Home

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Course Description

This course is designed to give students a hands on introduction to research in a Cell Biology Laboratory. Students will learn a variety of techniques focused on the analysis of live cells. Dictyostelium discoideum will be used throughout this course as the cell type under study. The eukaryotic amoeba is recognized as an NIH model organism which is studied in a wide variety of contexts including gene expression, cell motility and chemotaxis, development and differentiation and soil ecology.  See Dictybase for more information. Dictyostelium cells are simple and inexpensive to culture in the lab, and do not require special environments or incubators beyond normal human range temperature control.


The laboratory exercises focus on using the microscope to investigate various aspects of Dictyostelium biology. The experiments are designed to quantitatively assess each of the properties under study. Students work in pairs using fluorescence microscopes with associated video camera and computer for capturing images of cells. For the instructor there is a page that describes how this lab was set up and and the cost of assembling this equipment in the most frugal manner possible.

IMPORTANT ANNOUNCEMENTS  


LAB for TUESDAY - March 6, 2012 -

Make sure you have 2 plates   of HAPPY log-phase Ax2 and HK321 mutant cells. We are going to do macropinocytosis assay so passage your cells beforehand.



IMPORTANT DEADLINES:


Feb 28, 2012  [Tuesday]- Submit Under agar, over agar cAMP Development and SM/KA Development Lab Report and  Webpages.


March 5, 2012 - Deadline for completion of Microscopy I & II web pages.


March 6, 2012 [Tuesday] - Deadline for submission of Under Agar Folate Chemotaxis Lab Report/Webpage.


March 8, 2012 [Thursday] - Deadline for completion of the Transformation webpage.




 

      DAVID KNECHT

        PROFESSOR in charge

        Department of Molecular and Cell Biology

        University of Connecticut

        91 North Eagleville Road, Storrs, CT 06269

        co-head, Flow Cytometry and Confocal Microscopy Facility

        email: david.knecht@uconn.edu

        phone:    Lab - (860) 486-1895

                          Office -  (860) 486-2200

ILLUMINATORSIlluminators.htmlshapeimage_3_link_0
LED CONSTRUCTIONLED_Construction.htmlshapeimage_4_link_0
EQUIPMENTEquipment.htmlshapeimage_5_link_0
SOFTWARESoftware.htmlshapeimage_6_link_0
LECTURE NOTESLecture_Notes.htmlshapeimage_7_link_0
USEFUL LINKSUseful_Links.htmlshapeimage_8_link_0
SYLLABUSSyllabus_2012.htmlshapeimage_9_link_0


LINKS to Supplementary Materials for MCB 2225 Course

[HANDOUTS and Important PAPERS ]


General Laboratory Practice    

    Handout: Laboratory Guidelines

    Handout: Sterile Technique

    Handout: Lab reports.doc

    Handout: Lab Notebook.doc

Image and Analysis Software

    Handout: iWeb Web sites for MCB 2225.doc

    Handout: Getting started with Micro-Manager.doc

    Handout: mTrackJ instructions.doc

    Handout: Multi-D acquire instructions.doc

    Handout: ImageJ Users Manual 

Microscopy 

    Handout: microscope calibration.doc

    Handout: Koehler Illum.doc

    Handout: Fluorescence Microscopy

    Article:  AR_ACL_Jul_2002_Koehler.pdf Barbara Foster

Cell Biological Techniques

    Handout: Transfecting Cells


  Papers related to Lectures

   Chemotaxis:

  Paper:  THe control of chemotactic cell movement during Dictyostelium morphogenesis.  Dormann et al 2000 11128992.pdf

     Paper Oscillatory signaling and network responses during the development of Dictyostelium discoideum  McMains et al 2008.pdf                                                             Paper:   Dictyostelium discoideum—a model for many reasons Sarah J. Annesley Æ     Paul R. Fisher.pdf

    Paper: Developmental Decisions in Dictyostelium discoideum;

                  Dev Biol 2005 Strmecki .pdf

    Paper: Dictyostelium discoideum: a model system for differentiation and    

                  patterning;   Int J Dev Biol 2000 Escalante.pdf

    Paper: Eukaryotic Chemotaxis at a Glance;  J Cell Sci 2008 Bagorda.pdf                   

   Paper: Signal Relay During Chemotaxis ;  J Microscopy 2008 Garcia.pdf

    Paper:  Chemotaxis: Finding the Way Forward with Dictyostelium; Trends in  Cell Biol

                  2009 King, Insall.pdf

    Paper:  Optical Microscopy; Michael Davidson and Mortimer Abramowitz

    HandoutFormaldehyde Fixation

    Handout: ImageJ 3D viewer


Papers for Independent Projects


Links to Software


ImageJ image processing:  http://rsbweb.nih.gov/ij/index.html

    mtrackJ for tracking cells:  http://www.imagescience.org/meijering/software/mtrackj/

Micro-manager: http://www.micro-manager.org/

VNC (for remote connection to lab computers )

    Macintosh:  Chicken of the VNC:    http://download.cnet.com/Chicken-of-the-VNC/3000-7240_4-25164.html?tag=mncol;1

    PC: UltraVNC  http://download.cnet.com/UltraVNC/3000-7240_4-10739356.html?tag=mncol;1



LINKS to Students’ Websites  [Class 2012]

LINKS to Students’ Websites  [Class 2012]

Cellbio1: Korab’s and Marc’s Websitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio1_filesshapeimage_11_link_0
Cellbio2: Wells’s and Sylvia’s Websitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio2_filesshapeimage_12_link_0
Cellbio3: Chris’s and Jasmine’s Website  WebsiteWebsitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio3_filesshapeimage_13_link_0
 Cellbio4: Cory’s and Kyle’s Websitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio4_filesshapeimage_14_link_0
Cellbio5: Stickel’s and Pandit’s Websitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio5_filesshapeimage_15_link_0
Cellbio6: Andrey’s and Kushal’s Websitehttp://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio6_filesshapeimage_16_link_0

Teaching and Learning Protocols